MolNFT v1 · #55437 · protein

Structure of the matrix protein from human respiratory syncytial virus

2YKD: “Structure of the matrix protein from human respiratory syncytial virus”. X-ray diffraction, 1 pocket (best druggability 0.41). MolNFT v1 #55437 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2YKD
Type: protein
Length: 255 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Matrix protein
UniProt: P03419
Pockets: 1 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Matrix protein	protein	255	20% helix, 44% strand	P03419

Ligands and binding sites

ACT · Acetate ion · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	94	0.41	0.77	22	ACT

Compared structures

2YKD · Structure of the matrix protein from human respiratory syncytial virus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03419
Elsewhere: RCSB PDB 2YKD · PDBe 2YKD · UniProt P03419

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