MolNFT v1 · #55357 · protein

Sequencing a protein by X-ray crystallography. II. refinement of yeast hexokinase B co-ordinates and sequence at 2.1 ångströms resolution

2YHX: “Sequencing a protein by X-ray crystallography. II. refinement of yeast hexokinase B co-ordinates and sequence…”. X-ray diffraction, 1 ligand (OTG), 2 pockets (best druggability 0.50). MolNFT v1 #55357 on GenesisL1: 3D structure…

PDB: 2YHX
Type: protein
Length: 457 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hexokinase B
EC: 2.7.1.1
Ligands: OTG
Pockets: 2 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hexokinase B (EC 2.7.1.1)	protein	457	43% helix, 17% strand	—

Ligands and binding sites

OTG · 2-deoxy-2-{[(2-methylphenyl)carbonyl]amino}-alpha-D-glucopyranose · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	247	0.50	0.75	35	OTG
2	55	0.25	0.72	13	empty

Compared structures

2YHX · Sequencing a protein by X-ray crystallography. II. refinement of yeast hexokinase B… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2YHX · PDBe 2YHX

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