MolNFT v1 · #55347 · protein
Clostridium perfringens enterotoxin at 4.0 ångström resolution
2YHJ · Heat-labile enterotoxin B chain: “Clostridium perfringens enterotoxin at 4.0 ångström resolution”. X-ray diffraction, 1 pocket (best druggability 0.63). MolNFT v1 #55347 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2YHJ
- Type
- protein
- Length
- 570 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Heat-labile enterotoxin B chain
- UniProt
- P01558
- Pockets
- 1 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Heat-labile enterotoxin B chain | protein | 285 | 11% helix, 54% strand | P01558 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 570 | 0.63 | 0.75 | 64 | empty |
Interfaces
1 interface between chains.
- A–B · 243 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 2YHJ · Clostridium perfringens Enterotoxin at 4.0 Angstrom Resolution · the same entry in another collection · chain A against A, TM-score 1.00
- P01558 · AlphaFold monomer V2.0 prediction for heat-labile enterotoxin B chain (P01558) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01558
- Elsewhere: RCSB PDB 2YHJ · PDBe 2YHJ · UniProt P01558
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