MolNFT v1 · #55345 · protein
MICROVIRIN:MANNOBIOSE complex
2YHH · Mannan-binding lectin: “MICROVIRIN:MANNOBIOSE complex”. Solution nmr, 1 ligand (MAN), 1 pocket (best druggability 0.68). MolNFT v1 #55345 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2YHH
- Type
- protein
- Length
- 108 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mannan-binding lectin
- UniProt
- Q2MDE2
- Ligands
- MAN
- Pockets
- 1 · best druggability 0.68
Structure
solution nmr · 1 distinct chain · 9% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mannan-binding lectin | protein | 108 | 9% helix, 49% strand | Q2MDE2 |
Ligands and binding sites
- MAN · alpha-D-mannopyranose · sugar · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 130 | 0.68 | 0.89 | 31 | empty |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 2YHH · Microvirin:mannobiose complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2MDE2
- Elsewhere: RCSB PDB 2YHH · PDBe 2YHH · UniProt Q2MDE2
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