MolNFT v1 · #55054 · protein
Native vim-7. structural and computational investigations of vim-7: insights into the substrate specificity of vim metallo-beta-lactamases
2Y87 · Metallo-B-lactamase: “Native vim-7. structural and computational investigations of vim-7: insights into the substrate specificity…”. X-ray diffraction, 3 ligands (ZN, MG, UNX), 1 pocket (best druggability 0.55). MolNFT v1 #55054 on…
- PDB
- 2Y87
- Type
- protein
- Length
- 227 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Metallo-B-lactamase
- UniProt
- Q840P9
- Ligands
- ZN, MG, UNX
- Pockets
- 1 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Metallo-B-lactamase | protein | 227 | 26% helix, 29% strand | Q840P9 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A
- MG · Magnesium ion · metal · chains A
- UNX · Unknown atom or ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 189 | 0.55 | 0.79 | 27 | ZN, UNX |
Compared structures
- 2Y87 · Native VIM-7. Structural and computational investigations of VIM-7: Insights into the… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q840P9
- Elsewhere: RCSB PDB 2Y87 · PDBe 2Y87 · UniProt Q840P9
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