MolNFT v1 · #55040 · protein
Dntr inducer binding domain in complex with salicylate. trigonal crystal form
2Y7P · Lysr-type regulatory protein: “Dntr inducer binding domain in complex with salicylate. trigonal crystal form”. X-ray diffraction, 2 ligands (SAL, PEU), 1 pocket (best druggability 0.68). MolNFT v1 #55040 on GenesisL1: 3D structure…
- PDB
- 2Y7P
- Type
- protein
- Length
- 215 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysr-type regulatory protein
- UniProt
- Q7WT50
- Ligands
- SAL, PEU
- Pockets
- 1 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysr-type regulatory protein | protein | 215 | 35% helix, 27% strand | Q7WT50 |
Ligands and binding sites
- SAL · 2-hydroxybenzoic acid · ligand · 2 copies · chains A
- PEU · 2,5,8,11,14,17,20,23,26,29,32,35,38,41,44,47,50,53,56, 59,62,65,68,71,74,77,80-heptacosaoxadooctacontan-82-ol · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 164 | 0.68 | 0.87 | 35 | SAL, PEU |
Compared structures
- 2Y7P · DntR Inducer Binding Domain in Complex with Salicylate. Trigonal crystal form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7WT50
- Elsewhere: RCSB PDB 2Y7P · PDBe 2Y7P · UniProt Q7WT50
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.