MolNFT v1 · #54942 · protein
Crystal structure of human P58(IPK) in space group P312
2Y4U · Dnaj homolog subfamily C member 3: “Crystal structure of human P58(IPK) in space group P312”. X-ray diffraction, 2 pockets (best druggability 0.57). MolNFT v1 #54942 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2Y4U
- Type
- protein
- Length
- 424 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dnaj homolog subfamily C member 3
- UniProt
- Q13217
- Pockets
- 2 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 79% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dnaj homolog subfamily C member 3 | protein | 424 | 79% helix, 0% strand | Q13217 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 77 | 0.57 | 0.87 | 24 | empty |
| 2 | 54 | 0.35 | 0.78 | 12 | empty |
Modifications
Observed in the structure: 8 modified, 2 disulfide (engineered, disulfide).
Compared structures
- 2Y4U · Crystal structure of human P58(IPK) in space group P312 · the same entry in another collection · chain A against A, TM-score 1.00
- Q13217 · AlphaFold monomer V2.0 prediction for dnaj homolog subfamily C member 3 (Q13217) · a predicted model of the same protein · chain A against A, TM-score 0.79
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q13217
- Elsewhere: RCSB PDB 2Y4U · PDBe 2Y4U · UniProt Q13217
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