MolNFT v1 · #54758 · protein
Crystal structure of EPHA4 kinase domain in complex with vuf 12058
2XYU · Ephrin type-a receptor 4,: “Crystal structure of EPHA4 kinase domain in complex with vuf 12058”. X-ray diffraction, 1 ligand (Q9G), 1 pocket (best druggability 0.60). MolNFT v1 #54758 on GenesisL1: 3D structure, binding sites and…
- PDB
- 2XYU
- Type
- protein
- Length
- 260 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ephrin type-a receptor 4,
- EC
- 2.7.10.1
- UniProt
- Q03137
- Ligands
- Q9G
- Pockets
- 1 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ephrin type-a receptor 4, (EC 2.7.10.1) | protein | 260 | 42% helix, 17% strand | Q03137 |
Ligands and binding sites
- Q9G · 5-(5-fluoro-2-methylphenyl)-6,7,8,9-tetrahydro-3H-pyrazolo[3,4-c]isoquinolin-1-amine · ligand · chains A
- GOL · Glycerol · additive · 6 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 266 | 0.60 | 0.79 | 27 | Q9G |
Compared structures
- 2XYU · Crystal structure of EphA4 kinase domain in complex with VUF 12058 · the same entry in another collection · chain A against A, TM-score 1.00
- Q03137 · AlphaFold monomer V2.0 prediction for ephrin type-a receptor 4 (Q03137) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q03137
- Elsewhere: RCSB PDB 2XYU · PDBe 2XYU · UniProt Q03137
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