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MolNFT v1 · #54737 · protein

Human angiotensin converting enzyme in complex with phosphinic tripeptide

2XY9 · Angiotensin-converting enzyme: “Human angiotensin converting enzyme in complex with phosphinic tripeptide”. X-ray diffraction, 6 ligands (3ES, NAG, BMA), 4 pockets (best druggability 0.84). MolNFT v1 #54737 on GenesisL1: 3D…

PDB
2XY9
Type
protein
Length
581 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Angiotensin-converting enzyme
EC
3.4.15.1
UniProt
P12821
Ligands
3ES, NAG, BMA, FUC, ZN, CL
Pockets
4 · best druggability 0.84

Structure

x-ray diffraction · 1 distinct chain · 62% helix, 3% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AAngiotensin-converting enzyme (EC 3.4.15.1)protein58162% helix, 3% strandP12821

Ligands and binding sites

  • 3ES · [(2S)-2-({3-[hydroxyl(2-phenyl-(1R)-1-{[(benzyloxy)[(2s)-2-({3-[hydroxyl(2-phenyl-(1R)-1-carbonyl]-amino}ethyl)phosphinyl]-2-[(3-phenylisoxazol-5-yl)methyl]-1-oxo-propyl}amino)-3-(4-hydroxy-phenyl) · ligand · 2 copies · chains A
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A
  • BMA · beta-D-mannopyranose · sugar
  • FUC · alpha-L-fucopyranose · sugar · chains A
  • ZN · Zinc ion · metal · chains A
  • CL · Chloride ion · ion · 2 copies · chains A
  • ACT · Acetate ion · additive · chains A
  • EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
14910.840.91533ES
24040.800.88633ES
3590.610.9217empty
4550.540.8915ACT

Modifications

Observed in the structure: 3 disulfide, 2 glycan (disulfide, N-glycosylation).

Compared structures

  • 2XY9 · Human Angiotensin converting enzyme in complex with phosphinic tripeptide · the same entry in another collection · chain A against A, TM-score 1.00
  • P12821 · AlphaFold monomer V2.0 prediction for angiotensin-converting enzyme (P12821) · a predicted model of the same protein · chain A against A, TM-score 0.99

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