MolNFT v1 · #54668 · protein
The crystal structure of methylglyoxal synthase from thermus sp. GH5 bound to phosphate ion.
2XW6: “The crystal structure of methylglyoxal synthase from thermus sp. GH5 bound to phosphate ion.”. X-ray diffraction, 1 ligand (PO4). MolNFT v1 #54668 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2XW6
- Type
- protein
- Length
- 381 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Methylglyoxal synthase
- EC
- 4.2.3.3
- UniProt
- B3VH91
- Ligands
- PO4
Structure
x-ray diffraction · 3 distinct chains · 51% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Methylglyoxal synthase (EC 4.2.3.3) | protein | 130 | 48% helix, 15% strand | B3VH91 |
| B | Methylglyoxal synthase (EC 4.2.3.3) | protein | 127 | 51% helix, 16% strand | B3VH91 |
| C | Methylglyoxal synthase (EC 4.2.3.3) | protein | 124 | 52% helix, 16% strand | B3VH91 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
2 interfaces between chains.
- A–C · 1004 Ų buried · 16 hydrogen bonds · protein-protein
- B–C · 138 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 2XW6 · The Crystal Structure of Methylglyoxal Synthase from Thermus sp. GH5 Bound to Phosphate… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B3VH91
- Elsewhere: RCSB PDB 2XW6 · PDBe 2XW6 · UniProt B3VH91
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