MolNFT v1 · #54663 · protein
Cobalt chelatase cbik (periplasmatic) from desulvobrio vulgaris hildenborough (native)
2XVX · Chelatase, putative: “Cobalt chelatase cbik (periplasmatic) from desulvobrio vulgaris hildenborough (native)”. X-ray diffraction, 5 ligands (HEM, NA, SO4), 1 pocket (best druggability 0.64). MolNFT v1 #54663 on GenesisL1: 3D…
- PDB
- 2XVX
- Type
- protein
- Length
- 262 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chelatase, putative
- EC
- 4.99.1.3
- UniProt
- Q72EC8
- Ligands
- HEM, NA, SO4, CO2, CL
- Pockets
- 1 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chelatase, putative (EC 4.99.1.3) | protein | 262 | 45% helix, 17% strand | Q72EC8 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- NA · Sodium ion · metal · chains A
- SO4 · Sulfate ion · ion · 5 copies · chains A
- CO2 · Carbon dioxide · ion · chains A
- CL · Chloride ion · ion · chains A
- GOL · Glycerol · additive · 10 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 205 | 0.64 | 0.83 | 32 | SO4, GOL, CO2, NA |
Compared structures
- 2XVX · Cobalt chelatase CbiK (periplasmatic) from Desulvobrio vulgaris Hildenborough (Native) · the same entry in another collection · chain A against A, TM-score 1.00
- Q72EC8 · AlphaFold monomer V2.0 prediction for sirohydrochlorin cobaltochelatase cbikp (Q72EC8) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q72EC8
- Elsewhere: RCSB PDB 2XVX · PDBe 2XVX · UniProt Q72EC8
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