MolNFT v1 · #54507 · protein
C-terminal domain of BC2L-C lectin from burkholderia cenocepacia
2XR4: “C-terminal domain of BC2L-C lectin from burkholderia cenocepacia”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.48). MolNFT v1 #54507 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2XR4
- Type
- protein
- Length
- 232 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lectin
- UniProt
- B4EH86
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 56% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Lectin | protein | 116 | 0% helix, 56% strand | B4EH86 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.48 | 0.85 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1472 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 2XR4 · C-terminal domain of BC2L-C Lectin from Burkholderia cenocepacia · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B4EH86
- Elsewhere: RCSB PDB 2XR4 · PDBe 2XR4 · UniProt B4EH86
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