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MolNFT v1 · #54470 · protein

Crystal structure of BHRF1:BAK BH3 complex

2XPX · Apoptosis regulator BHRF1: “Crystal structure of BHRF1:BAK BH3 complex”. X-ray diffraction, 1 ligand (NO3). MolNFT v1 #54470 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
2XPX
Type
protein
Length
176 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Apoptosis regulator BHRF1; BCL-2 homologous ANTAGONIST/KILLER
UniProt
P03182, Q16611
Ligands
NO3

Structure

x-ray diffraction · 2 distinct chains · 78% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AApoptosis regulator BHRF1protein15377% helix, 0% strandP03182
BBCL-2 homologous ANTAGONIST/KILLERprotein2387% helix, 0% strandQ16611

Ligands and binding sites

  • NO3 · Nitrate ion · ion · 4 copies · chains A, B
  • EDO · 1,2-ethanediol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • A–B · 915 Ų buried · 3 hydrogen bonds · protein-protein

Compared structures

  • 2XPX · Crystal structure of BHRF1:Bak BH3 complex · the same entry in another collection · chain A against A, TM-score 1.00
  • Q16611 · AlphaFold monomer V2.0 prediction for BCL-2 homologous ANTAGONIST/KILLER (Q16611) · a predicted model of the same protein · chain B against A, TM-score 0.72

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