MolNFT v1 · #5426 · protein

A proton-NMR investigation of the fully reduced cytochrome C7 from desulfuromonas acetoxidans

1EHJ: “A proton-NMR investigation of the fully reduced cytochrome C7 from desulfuromonas acetoxidans”. Solution nmr, 1 ligand (HEC), 1 pocket (best druggability 0.66). MolNFT v1 #5426 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 1EHJ
Type: protein
Length: 68 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C7
UniProt: P00137
Ligands: HEC
Pockets: 1 · best druggability 0.66

Structure

solution nmr · 1 distinct chain · 32% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome C7	protein	68	32% helix, 10% strand	P00137

Ligands and binding sites

HEC · Heme C · ligand · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	367	0.66	0.80	43	HEC

Modifications

Observed in the structure: 6 cofactor (heme c attachment).

Compared structures

1EHJ · A proton-NMR investigation of the fully reduced cytochrome C7 from desulfuromonas… · the same entry in another collection · chain A against A, TM-score 1.00
P00137 · AlphaFold monomer V2.0 prediction for cytochrome C3 (P00137) · a predicted model of the same protein · chain A against A, TM-score 0.85

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00137
Elsewhere: RCSB PDB 1EHJ · PDBe 1EHJ · UniProt P00137

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