MolNFT v1 · #54218 · protein
The structure of ascorbate peroxidase compound I
2XI6: “The structure of ascorbate peroxidase compound I”. X-ray diffraction, 3 ligands (HEM, K, SO4), 1 pocket (best druggability 0.78). MolNFT v1 #54218 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2XI6
- Type
- protein
- Length
- 249 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ascorbate peroxidase
- EC
- 1.11.1.11
- UniProt
- Q43758
- Ligands
- HEM, K, SO4
- Pockets
- 1 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 54% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ascorbate peroxidase (EC 1.11.1.11) | protein | 249 | 54% helix, 2% strand | Q43758 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- K · Potassium ion · metal · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 353 | 0.78 | 0.88 | 55 | HEM |
Compared structures
- 2XI6 · The structure of ascorbate peroxidase Compound I · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q43758
- Elsewhere: RCSB PDB 2XI6 · PDBe 2XI6 · UniProt Q43758
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.