MolNFT v1 · #54195 · protein
Crystal structure of peroxiredoxin 5 from alvinella pompejana
2XHF: “Crystal structure of peroxiredoxin 5 from alvinella pompejana”. X-ray diffraction, 1 pocket (best druggability 0.59). MolNFT v1 #54195 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2XHF
- Type
- protein
- Length
- 310 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peroxiredoxin 5
- EC
- 1.11.1.15
- Pockets
- 1 · best druggability 0.59
Structure
x-ray diffraction · 2 distinct chains · 30% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peroxiredoxin 5 (EC 1.11.1.15) | protein | 156 | 30% helix, 24% strand | — |
| B | Peroxiredoxin 5 (EC 1.11.1.15) | protein | 154 | 31% helix, 25% strand | — |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 118 | 0.59 | 0.86 | 30 | empty |
Interfaces
1 interface between chains.
- A–B · 719 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 2XHF · Crystal structure of peroxiredoxin 5 from Alvinella pompejana · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2XHF · PDBe 2XHF
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