MolNFT v1 · #5418 · protein
Crystal structure of recombinant trypsin-solubilized fragment of cytochrome B5
1EHB · Protein (cytochrome B5): “Crystal structure of recombinant trypsin-solubilized fragment of cytochrome B5”. X-ray diffraction, 1 ligand (HEM), 1 pocket (best druggability 0.61). MolNFT v1 #5418 on GenesisL1: 3D structure, binding…
- PDB
- 1EHB
- Type
- protein
- Length
- 82 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (cytochrome B5)
- UniProt
- P00171
- Ligands
- HEM
- Pockets
- 1 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (cytochrome B5) | protein | 82 | 33% helix, 22% strand | P00171 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 126 | 0.61 | 0.85 | 20 | HEM |
Compared structures
- 1EHB · Crystal structure of recombinant trypsin-solubilized fragment of cytochrome B5 · the same entry in another collection · chain A against A, TM-score 1.00
- P00171 · AlphaFold monomer V2.0 prediction for cytochrome B5 (P00171) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00171
- Elsewhere: RCSB PDB 1EHB · PDBe 1EHB · UniProt P00171
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