MolNFT v1 · #54164 · protein
Virus like particle of L172W mutant of minute virus of mice - the immunosuppressive strain
2XGK · Coat protein VP2: “Virus like particle of L172W mutant of minute virus of mice - the immunosuppressive strain”. X-ray diffraction, 11 pockets (best druggability 0.59). MolNFT v1 #54164 on GenesisL1: 3D structure, binding sites and…
- PDB
- 2XGK
- Type
- protein
- Length
- 542 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Coat protein VP2
- UniProt
- P07302
- Pockets
- 11 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Coat protein VP2 | protein | 542 | 7% helix, 26% strand | P07302 |
Pockets
11 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 254 | 0.59 | 0.79 | 35 | empty |
| 2 | 418 | 0.57 | 0.74 | 41 | empty |
| 3 | 148 | 0.54 | 0.80 | 29 | empty |
| 4 | 148 | 0.45 | 0.76 | 25 | empty |
| 5 | 112 | 0.38 | 0.74 | 15 | empty |
Compared structures
- 2XGK · Virus like particle of L172W mutant of Minute Virus of Mice - the immunosuppressive strain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07302
- Elsewhere: RCSB PDB 2XGK · PDBe 2XGK · UniProt P07302
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