MolNFT v1 · #54080 · protein
Crystal structure of the N. crassa qde-2 ago mid domain
2XDY · Post-transcriptional gene silencing protein qde-2: “Crystal structure of the N. crassa qde-2 ago mid domain”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.28). MolNFT v1 #54080 on GenesisL1: 3D structure, binding…
- PDB
- 2XDY
- Type
- protein
- Length
- 127 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Post-transcriptional gene silencing protein qde-2
- UniProt
- Q9P8T1
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.28
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Post-transcriptional gene silencing protein qde-2 | protein | 127 | 47% helix, 18% strand | Q9P8T1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.28 | 0.74 | 14 | empty |
Compared structures
- 2XDY · Crystal structure of the N. crassa QDE-2 AGO MID domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9P8T1
- Elsewhere: RCSB PDB 2XDY · PDBe 2XDY · UniProt Q9P8T1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.