MolNFT v1 · #54055 · protein

Capsid structure of the infectious prochlorococcus cyanophage P-SSP7

2XD8 · T7-like capsid protein: “Capsid structure of the infectious prochlorococcus cyanophage P-SSP7”. Electron microscopy, 1 pocket (best druggability 0.30). MolNFT v1 #54055 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2XD8
Type: protein
Length: 2,541 residues
Chains: 7
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: T7-like capsid protein
UniProt: Q58N30
Pockets: 1 · best druggability 0.30

Structure

electron microscopy · 1 distinct chain · 0% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G	T7-like capsid protein	protein	363	0% helix, 0% strand	Q58N30

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	67	0.30	0.72	24	empty

Interfaces

7 interfaces between chains.

A–F · 462 Å² buried · 0 hydrogen bonds · protein-protein
E–F · 460 Å² buried · 0 hydrogen bonds · protein-protein
B–C · 394 Å² buried · 0 hydrogen bonds · protein-protein
D–E · 384 Å² buried · 0 hydrogen bonds · protein-protein
C–D · 375 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

2XD8 · Capsid structure of the infectious Prochlorococcus Cyanophage P-SSP7 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q58N30
Elsewhere: RCSB PDB 2XD8 · PDBe 2XD8 · UniProt Q58N30

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