MolNFT v1 · #53940 · protein
Structure of the pilus backbone (rrgb) from streptococcus pneumoniae
2X9X · Cell wall surface anchor family protein: “Structure of the pilus backbone (rrgb) from streptococcus pneumoniae”. X-ray diffraction, 1 ligand (NA), 4 pockets (best druggability 0.49). MolNFT v1 #53940 on GenesisL1: 3D structure…
- PDB
- 2X9X
- Type
- protein
- Length
- 431 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cell wall surface anchor family protein
- UniProt
- Q97SC2
- Ligands
- NA
- Pockets
- 4 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cell wall surface anchor family protein | protein | 431 | 12% helix, 39% strand | Q97SC2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.49 | 0.86 | 17 | empty |
| 2 | 104 | 0.39 | 0.76 | 21 | empty |
| 3 | 90 | 0.36 | 0.75 | 16 | empty |
| 4 | 58 | 0.28 | 0.74 | 18 | empty |
Modifications
Observed in the structure: 1 modified (engineered).
Compared structures
- 2X9X · Structure of the pilus backbone (rrgb) from streptococcus pneumoniae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97SC2
- Elsewhere: RCSB PDB 2X9X · PDBe 2X9X · UniProt Q97SC2
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