MolNFT v1 · #53939 · protein

Structure of the pilus backbone (rrgb) from streptococcus pneumoniae

2X9W · Cell wall surface anchor family protein: “Structure of the pilus backbone (rrgb) from streptococcus pneumoniae”. X-ray diffraction, 6 pockets (best druggability 0.49). MolNFT v1 #53939 on GenesisL1: 3D structure, binding sites and…

PDB: 2X9W
Type: protein
Length: 442 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cell wall surface anchor family protein
UniProt: Q97SC2
Pockets: 6 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 13% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cell wall surface anchor family protein	protein	442	13% helix, 39% strand	Q97SC2

Ligands and binding sites

GOL · Glycerol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	85	0.49	0.83	21	empty
2	106	0.40	0.76	19	empty
3	76	0.34	0.76	16	empty
4	77	0.31	0.74	18	empty
5	53	0.28	0.75	13	empty

Modifications

Observed in the structure: 3 isopeptide, 1 modified (isopeptide, engineered).

Compared structures

2X9W · Structure of the pilus backbone (rrgb) from streptococcus pneumoniae · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q97SC2
Elsewhere: RCSB PDB 2X9W · PDBe 2X9W · UniProt Q97SC2

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