MolNFT v1 · #53760 · protein
Orf 114A from sulfolobus islandicus rudivirus 1
2X4I · Uncharacterized protein 114: “Orf 114A from sulfolobus islandicus rudivirus 1”. X-ray diffraction, 5 pockets (best druggability 0.56). MolNFT v1 #53760 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2X4I
- Type
- protein
- Length
- 409 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein 114
- UniProt
- Q8QL27
- Pockets
- 5 · best druggability 0.56
Structure
x-ray diffraction · 4 distinct chains · 29% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein 114 | protein | 105 | 30% helix, 30% strand | Q8QL27 |
| B | Uncharacterized protein 114 | protein | 103 | 30% helix, 27% strand | Q8QL27 |
| C | Uncharacterized protein 114 | protein | 99 | 26% helix, 29% strand | Q8QL27 |
| D | Uncharacterized protein 114 | protein | 102 | 28% helix, 29% strand | Q8QL27 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 144 | 0.56 | 0.82 | 28 | empty |
| 2 | 150 | 0.54 | 0.81 | 31 | empty |
| 3 | 201 | 0.47 | 0.75 | 32 | empty |
| 4 | 63 | 0.27 | 0.73 | 16 | empty |
| 5 | 50 | 0.27 | 0.74 | 12 | empty |
Interfaces
6 interfaces between chains.
- A–B · 848 Ų buried · 12 hydrogen bonds · protein-protein
- C–D · 809 Ų buried · 12 hydrogen bonds · protein-protein
- A–C · 553 Ų buried · 8 hydrogen bonds · protein-protein
- B–D · 238 Ų buried · 3 hydrogen bonds · protein-protein
- B–C · 106 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 2X4I · ORF 114a from Sulfolobus islandicus rudivirus 1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8QL27
- Elsewhere: RCSB PDB 2X4I · PDBe 2X4I · UniProt Q8QL27
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