MolNFT v1 · #53657 · protein + RNA

Structure of RNA15 rrm with RNA bound (G)

2X1A · MRNA 3'-end-processing protein RNA15: “Structure of RNA15 rrm with RNA bound (G)”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #53657 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2X1A
Type: protein + RNA
Length: 88 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: MRNA 3'-end-processing protein RNA15; 5'-R(*GP*UP*UP*GP*UP)-3'
UniProt: P25299
Ligands: MG

Structure

x-ray diffraction · 2 distinct chains · 25% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	MRNA 3'-end-processing protein RNA15	protein	87	25% helix, 37% strand	P25299
B	5'-R(GPUPUPGP*UP)-3'	rna	1	—	—

Ligands and binding sites

MG · Magnesium ion · metal · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 205 Å² buried · 8 hydrogen bonds · protein-nucleic

Compared structures

2X1A · Structure of Rna15 RRM with RNA bound (G) · the same entry in another collection · chain A against A, TM-score 1.00
P25299 · AlphaFold monomer V2.0 prediction for mRNA 3'-end-processing protein RNA15 (P25299) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P25299
Elsewhere: RCSB PDB 2X1A · PDBe 2X1A · UniProt P25299

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