MolNFT v1 · #53113 · protein
Crystal structure of the native E. COLI zinc amidase amid
2WKX · N-acetylmuramoyl-L-alanine amidase amid: “Crystal structure of the native E. COLI zinc amidase amid”. X-ray diffraction, 2 ligands (ZN, CL), 1 pocket (best druggability 0.35). MolNFT v1 #53113 on GenesisL1: 3D structure, binding…
- PDB
- 2WKX
- Type
- protein
- Length
- 257 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- N-acetylmuramoyl-L-alanine amidase amid
- EC
- 3.5.1.28
- UniProt
- P75820
- Ligands
- ZN, CL
- Pockets
- 1 · best druggability 0.35
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | N-acetylmuramoyl-L-alanine amidase amid (EC 3.5.1.28) | protein | 257 | 35% helix, 17% strand | P75820 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
- CL · Chloride ion · ion · 2 copies · chains A
- GOL · Glycerol · additive · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 80 | 0.35 | 0.76 | 21 | CL |
Compared structures
- 2WKX · Crystal structure of the native E. coli zinc amidase AmiD · the same entry in another collection · chain A against A, TM-score 1.00
- P75820 · AlphaFold monomer V2.0 prediction for N-acetylmuramoyl-L-alanine amidase amid (P75820) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P75820
- Elsewhere: RCSB PDB 2WKX · PDBe 2WKX · UniProt P75820
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.