MolNFT v1 · #53072 · protein
Nanc porin structure in rhombohedral crystal form.
2WJR · Probable N-acetylneuraminic acid outer membrane channel…: “Nanc porin structure in rhombohedral crystal form.”. X-ray diffraction, 1 ligand (PO4), 1 pocket (best druggability 0.80). MolNFT v1 #53072 on GenesisL1: 3D structure…
- PDB
- 2WJR
- Type
- protein
- Length
- 204 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable N-acetylneuraminic acid outer membrane channel protein nanc
- UniProt
- P69856
- Ligands
- PO4
- Pockets
- 1 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 70% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable N-acetylneuraminic acid outer membrane channel protein nanc | protein | 204 | 0% helix, 70% strand | P69856 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · chains A
- OCT · N-octane · additive · 4 copies · chains A
- EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 977 | 0.80 | 0.81 | 67 | EPE |
Compared structures
- 2WJR · NanC porin structure in rhombohedral crystal form. · the same entry in another collection · chain A against A, TM-score 1.00
- P69856 · AlphaFold monomer V2.0 prediction for probable N-acetylneuraminic acid outer membrane… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P69856
- Elsewhere: RCSB PDB 2WJR · PDBe 2WJR · UniProt P69856
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