MolNFT v1 · #52937 · protein
Crystal structure of machupo virus envelope glycoprotein GP1
2WFO · Glycoprotein 1: “Crystal structure of machupo virus envelope glycoprotein GP1”. X-ray diffraction, 1 ligand (NAG), 2 pockets (best druggability 0.38). MolNFT v1 #52937 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2WFO
- Type
- protein
- Length
- 153 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycoprotein 1
- UniProt
- Q6PXS3
- Ligands
- NAG
- Pockets
- 2 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycoprotein 1 | protein | 153 | 27% helix, 24% strand | Q6PXS3 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 69 | 0.38 | 0.78 | 16 | empty |
| 2 | 61 | 0.31 | 0.76 | 17 | empty |
Modifications
Observed in the structure: 4 disulfide, 4 glycan (disulfide, N-glycosylation).
Compared structures
- 2WFO · Crystal structure of Machupo virus envelope glycoprotein GP1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6PXS3
- Elsewhere: RCSB PDB 2WFO · PDBe 2WFO · UniProt Q6PXS3
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