MolNFT v1 · #52910 · protein
Crystal structure of human apom in complex with glycerol 1- myristic acid
2WEX · Apolipoprotein M: “Crystal structure of human apom in complex with glycerol 1- myristic acid”. X-ray diffraction, 1 ligand (GYM), 1 pocket (best druggability 0.75). MolNFT v1 #52910 on GenesisL1: 3D structure, binding sites and…
- PDB
- 2WEX
- Type
- protein
- Length
- 159 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Apolipoprotein M
- UniProt
- O95445
- Ligands
- GYM
- Pockets
- 1 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 14% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Apolipoprotein M | protein | 159 | 14% helix, 42% strand | O95445 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 234 | 0.75 | 0.88 | 36 | GYM |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 2WEX · Crystal structure of human apoM in complex with glycerol 1- myristic acid · the same entry in another collection · chain A against A, TM-score 1.00
- O95445 · AlphaFold monomer V2.0 prediction for apolipoprotein M (O95445) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O95445
- Elsewhere: RCSB PDB 2WEX · PDBe 2WEX · UniProt O95445
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