MolNFT v1 · #52817 · protein
Three-dimensional structure of the nitrogen fixation flavodoxin (niff) from rhodobacter capsulatus at 2.2 a
2WC1: “Three-dimensional structure of the nitrogen fixation flavodoxin (niff) from rhodobacter capsulatus at 2.2 a”. X-ray diffraction, 1 ligand (FMN), 1 pocket (best druggability 0.47). MolNFT v1 #52817 on GenesisL1: 3D structure, binding…
- PDB
- 2WC1
- Type
- protein
- Length
- 182 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flavodoxin
- UniProt
- P52967
- Ligands
- FMN
- Pockets
- 1 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Flavodoxin | protein | 182 | 32% helix, 20% strand | P52967 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 101 | 0.47 | 0.80 | 22 | FMN |
Compared structures
- 2WC1 · Three-dimensional Structure of the Nitrogen Fixation Flavodoxin (NifF) from Rhodobacter… · the same entry in another collection · chain A against A, TM-score 1.00
- P52967 · AlphaFold monomer V2.0 prediction for flavodoxin (P52967) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P52967
- Elsewhere: RCSB PDB 2WC1 · PDBe 2WC1 · UniProt P52967
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.