MolNFT v1 · #52757 · protein

Structure of a family two carbohydrate esterase from cellvibrio japonicus

2WAA · Xylan esterase, putative, AXE2C: “Structure of a family two carbohydrate esterase from cellvibrio japonicus”. X-ray diffraction, 2 pockets (best druggability 0.50). MolNFT v1 #52757 on GenesisL1: 3D structure, binding sites and…

PDB: 2WAA
Type: protein
Length: 335 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Xylan esterase, putative, AXE2C
EC: 3.1.1.72
UniProt: B3PIB0
Pockets: 2 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 24% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Xylan esterase, putative, AXE2C (EC 3.1.1.72)	protein	335	24% helix, 31% strand	B3PIB0

Ligands and binding sites

ACT · Acetate ion · additive · 5 copies · chains A
GOL · Glycerol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	188	0.50	0.76	24	empty
2	65	0.30	0.74	17	GOL

Compared structures

2WAA · Structure of a family two carbohydrate esterase from Cellvibrio japonicus · the same entry in another collection · chain A against A, TM-score 1.00
B3PIB0 · AlphaFold monomer V2.0 prediction for acetylxylan esterase / glucomannan deacetylase… · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B3PIB0
Elsewhere: RCSB PDB 2WAA · PDBe 2WAA · UniProt B3PIB0

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