MolNFT v1 · #52751 · protein
Factor inhibiting hif-1 alpha with N,3-dihydroxybenzamide
2WA4 · Hypoxia-inducible factor 1-alpha inhibitor: “Factor inhibiting hif-1 alpha with N,3-dihydroxybenzamide”. X-ray diffraction, 3 ligands (069, FE2, SO4), 5 pockets (best druggability 0.66). MolNFT v1 #52751 on GenesisL1: 3D structure…
- PDB
- 2WA4
- Type
- protein
- Length
- 332 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypoxia-inducible factor 1-alpha inhibitor
- EC
- 1.14.11.16
- UniProt
- Q9NWT6
- Ligands
- 069, FE2, SO4
- Pockets
- 5 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypoxia-inducible factor 1-alpha inhibitor (EC 1.14.11.16) | protein | 332 | 29% helix, 25% strand | Q9NWT6 |
Ligands and binding sites
- 069 · N,3-dihydroxybenzamide · ligand · 2 copies · chains A
- FE2 · Fe (II) ion · metal · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 380 | 0.66 | 0.80 | 37 | FE2, 069 |
| 2 | 150 | 0.52 | 0.79 | 27 | empty |
| 3 | 88 | 0.38 | 0.76 | 23 | empty |
| 4 | 71 | 0.31 | 0.75 | 14 | empty |
| 5 | 73 | 0.28 | 0.72 | 16 | empty |
Compared structures
- 2WA4 · FACTOR INHIBITING HIF-1 ALPHA WITH N,3-dihydroxybenzamide · the same entry in another collection · chain A against A, TM-score 1.00
- Q9NWT6 · AlphaFold monomer V2.0 prediction for hypoxia-inducible factor 1-alpha inhibitor (Q9NWT6) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NWT6
- Elsewhere: RCSB PDB 2WA4 · PDBe 2WA4 · UniProt Q9NWT6
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