MolNFT v1 · #52584 · protein
Structure of the hypothetical protein VC0508 from vibrio cholerae vsp-II pathogenicity island
2W56: “Structure of the hypothetical protein VC0508 from vibrio cholerae vsp-II pathogenicity island”. X-ray diffraction, 3 pockets (best druggability 0.54). MolNFT v1 #52584 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2W56
- Type
- protein
- Length
- 274 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- VC0508
- UniProt
- Q9KUL0
- Pockets
- 3 · best druggability 0.54
Structure
x-ray diffraction · 2 distinct chains · 24% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | VC0508 | protein | 143 | 24% helix, 35% strand | Q9KUL0 |
| B | VC0508 | protein | 131 | 24% helix, 38% strand | Q9KUL0 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 157 | 0.54 | 0.81 | 31 | empty |
| 2 | 189 | 0.48 | 0.76 | 29 | empty |
| 3 | 68 | 0.31 | 0.74 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 757 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 2W56 · Structure of the hypothetical protein VC0508 from Vibrio cholerae VSP- II pathogenicity… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KUL0
- Elsewhere: RCSB PDB 2W56 · PDBe 2W56 · UniProt Q9KUL0
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