MolNFT v1 · #52515 · protein

Crystal structure of the pseudaminidase from pseudomonas aeruginosa

2W38 · Sialidase: “Crystal structure of the pseudaminidase from pseudomonas aeruginosa”. X-ray diffraction, 4 pockets (best druggability 0.59). MolNFT v1 #52515 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2W38
Type: protein
Length: 432 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sialidase
UniProt: Q9L6G4
Pockets: 4 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain · 2% helix, 56% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sialidase	protein	432	2% helix, 56% strand	Q9L6G4

Ligands and binding sites

GOL · Glycerol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	268	0.59	0.78	29	empty
2	152	0.57	0.82	36	empty
3	163	0.42	0.74	27	empty
4	75	0.40	0.79	15	empty

Compared structures

2W38 · Crystal structure of the pseudaminidase from Pseudomonas aeruginosa · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9L6G4
Elsewhere: RCSB PDB 2W38 · PDBe 2W38 · UniProt Q9L6G4

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