MolNFT v1 · #52321 · protein

H. salinarum dodecin E45A mutant

2VX9: “H. salinarum dodecin E45A mutant”. X-ray diffraction, 3 ligands (RBF, NA, CL). MolNFT v1 #52321 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2VX9
Type: protein
Length: 63 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dodecin
UniProt: B0R5M0
Ligands: RBF, NA, CL

Structure

x-ray diffraction · 1 distinct chain · 24% helix, 52% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Dodecin	protein	63	24% helix, 52% strand	B0R5M0

Ligands and binding sites

RBF · Riboflavin · ligand · chains A
NA · Sodium ion · metal · 4 copies · chains A
CL · Chloride ion · ion · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

2VX9 · H. salinarum dodecin E45A mutant · the same entry in another collection · chain A against A, TM-score 1.00
B0R5M0 · AlphaFold monomer V2.0 prediction for dodecin (B0R5M0) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B0R5M0
Elsewhere: RCSB PDB 2VX9 · PDBe 2VX9 · UniProt B0R5M0

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