MolNFT v1 · #52211 · protein

Crystal structure of pndk from bacillus anthracis

2VU5 · Nucleoside diphosphate kinase: “Crystal structure of pndk from bacillus anthracis”. X-ray diffraction, 1 pocket (best druggability 0.43). MolNFT v1 #52211 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2VU5
Type: protein
Length: 148 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nucleoside diphosphate kinase
EC: 2.7.4.6
UniProt: Q81SV8
Pockets: 1 · best druggability 0.43

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nucleoside diphosphate kinase (EC 2.7.4.6)	protein	148	45% helix, 16% strand	Q81SV8

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	132	0.43	0.76	23	empty

Compared structures

2VU5 · Crystal structure of Pndk from Bacillus anthracis · the same entry in another collection · chain A against A, TM-score 1.00
Q81SV8 · AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (Q81SV8) · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q81SV8
Elsewhere: RCSB PDB 2VU5 · PDBe 2VU5 · UniProt Q81SV8

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