MolNFT v1 · #5188 · protein

Cyclomaltodextrinase

1EA9: “Cyclomaltodextrinase”. X-ray diffraction, 15 pockets (best druggability 0.74). MolNFT v1 #5188 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1EA9
Type: protein
Length: 1,166 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cyclomaltodextrinase
EC: 3.2.1.54
UniProt: Q59226
Pockets: 15 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 24% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
C, D	Cyclomaltodextrinase (EC 3.2.1.54)	protein	583	24% helix, 18% strand	Q59226

Pockets

15 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	921	0.74	0.77	66	empty
2	117	0.66	0.89	23	empty
3	315	0.61	0.79	36	empty
4	198	0.58	0.81	26	empty
5	158	0.51	0.79	29	empty

Interfaces

1 interface between chains.

C–D · 447 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

1EA9 · Cyclomaltodextrinase · the same entry in another collection · chain C against C, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q59226
Elsewhere: RCSB PDB 1EA9 · PDBe 1EA9 · UniProt Q59226

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