MolNFT v1 · #51866 · protein

Crystal structure of rat profilin 2A

2VK3 · Profilin-2: “Crystal structure of rat profilin 2A”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #51866 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2VK3
Type: protein
Length: 142 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Profilin-2
UniProt: Q9EPC6
Ligands: SO4

Structure

x-ray diffraction · 1 distinct chain · 32% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Profilin-2	protein	142	32% helix, 30% strand	Q9EPC6

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A
DTU · (2R,3S)-1,4-dimercaptobutane-2,3-diol · additive · 2 copies · chains A
GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 2 covalent, 1 disulfide (additive adduct, disulfide).

Compared structures

2VK3 · Crystal structure of rat profilin 2a · the same entry in another collection · chain A against A, TM-score 1.00
Q9EPC6 · AlphaFold monomer V2.0 prediction for profilin-2 (Q9EPC6) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9EPC6
Elsewhere: RCSB PDB 2VK3 · PDBe 2VK3 · UniProt Q9EPC6

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