MolNFT v1 · #51846 · protein
Tailspike protein of E.COLI bacteriophage HK620
2VJI: “Tailspike protein of E.COLI bacteriophage HK620”. X-ray diffraction, 2 ligands (PO4, CL), 2 pockets (best druggability 0.52). MolNFT v1 #51846 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2VJI
- Type
- protein
- Length
- 598 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tailspike protein
- UniProt
- Q9AYY6
- Ligands
- PO4, CL
- Pockets
- 2 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tailspike protein | protein | 598 | 10% helix, 43% strand | Q9AYY6 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · chains A
- CL · Chloride ion · ion · chains A
- EDO · 1,2-ethanediol · additive · chains A
- PG0 · 2-(2-methoxyethoxy)ethanol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 231 | 0.52 | 0.76 | 44 | empty |
| 2 | 76 | 0.32 | 0.74 | 16 | empty |
Compared structures
- 2VJI · Tailspike protein of E.coli bacteriophage HK620 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9AYY6
- Elsewhere: RCSB PDB 2VJI · PDBe 2VJI · UniProt Q9AYY6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.