MolNFT v1 · #51711 · protein
AKAP18 delta central domain - cmp
2VFL: “AKAP18 delta central domain - cmp”. X-ray diffraction, 1 ligand (C5P), 1 pocket (best druggability 0.62). MolNFT v1 #51711 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2VFL
- Type
- protein
- Length
- 205 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- AKAP18 delta
- Ligands
- C5P
- Pockets
- 1 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | AKAP18 delta | protein | 205 | 38% helix, 27% strand | — |
Ligands and binding sites
- C5P · Cytidine-5'-monophosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 336 | 0.62 | 0.78 | 32 | C5P |
Compared structures
- 2VFL · AKAP18 delta central domain - CMP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2VFL · PDBe 2VFL
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