MolNFT v1 · #5169 · protein
Crystal structure of bovine cu, zn sod to 1.7 ångström (3 of 3)
1E9P · Superoxide dismutase: “Crystal structure of bovine cu, zn sod to 1.7 ångström (3 of 3)”. X-ray diffraction, 2 ligands (CU, ZN), 2 pockets (best druggability 0.57). MolNFT v1 #5169 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1E9P
- Type
- protein
- Length
- 302 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Superoxide dismutase
- EC
- 1.13.1.1
- UniProt
- P00442
- Ligands
- CU, ZN
- Pockets
- 2 · best druggability 0.57
Structure
x-ray diffraction · 2 distinct chains · 6% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Superoxide dismutase (EC 1.13.1.1) | protein | 151 | 6% helix, 42% strand | P00442 |
| B | Superoxide dismutase (EC 1.13.1.1) | protein | 151 | 6% helix, 42% strand | P00442 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 186 | 0.57 | 0.81 | 33 | empty |
| 2 | 98 | 0.36 | 0.75 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 653 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 1E9P · Crystal structure of bovine Cu, Zn SOD to 1.7 Angstrom (3 of 3) · the same entry in another collection · chain A against A, TM-score 1.00
- P00442 · AlphaFold monomer V2.0 prediction for superoxide dismutase [cu-zn] (P00442) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00442
- Elsewhere: RCSB PDB 1E9P · PDBe 1E9P · UniProt P00442
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