MolNFT v1 · #51612 · protein

Structure of phycoerythrobilin synthase pebs from the cyanophage P- SSM2 in the substrate free form

2VCL · Cyanobacterial phycoerythrobilin: “Structure of phycoerythrobilin synthase pebs from the cyanophage P- SSM2 in the substrate free form”. X-ray diffraction, 1 pocket (best druggability 0.68). MolNFT v1 #51612 on GenesisL1: 3D…

PDB: 2VCL
Type: protein
Length: 205 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cyanobacterial phycoerythrobilin
EC: 1.3.7.6
UniProt: Q58MU6
Pockets: 1 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cyanobacterial phycoerythrobilin (EC 1.3.7.6)	protein	205	33% helix, 33% strand	Q58MU6

Ligands and binding sites

GOL · Glycerol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	282	0.68	0.83	31	GOL

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

2VCL · Structure of Phycoerythrobilin Synthase PebS from the Cyanophage P-SSM2 in the substrate… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q58MU6
Elsewhere: RCSB PDB 2VCL · PDBe 2VCL · UniProt Q58MU6

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