MolNFT v1 · #5158 · protein
Mutant human thymidylate kinase (F105Y) complexed with dtmp and ADP
1E9E: “Mutant human thymidylate kinase (F105Y) complexed with dtmp and ADP”. X-ray diffraction, 3 ligands (TMP, ADP, MG), 1 pocket (best druggability 0.62). MolNFT v1 #5158 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1E9E
- Type
- protein
- Length
- 210 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thymidylate kinase
- EC
- 2.7.4.9
- UniProt
- P23919
- Ligands
- TMP, ADP, MG
- Pockets
- 1 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thymidylate kinase (EC 2.7.4.9) | protein | 210 | 47% helix, 13% strand | P23919 |
Ligands and binding sites
- TMP · Thymidine-5'-phosphate · ligand · chains A
- ADP · Adenosine-5'-diphosphate · ligand · chains A
- MG · Magnesium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 200 | 0.62 | 0.83 | 28 | TMP, MG |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P23919
- Elsewhere: RCSB PDB 1E9E · PDBe 1E9E · UniProt P23919
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