MolNFT v1 · #51578 · protein
Tailspike protein of bacteriophage SF6 complexed with tetrasaccharide
2VBM · Tailspike-protein: “Tailspike protein of bacteriophage SF6 complexed with tetrasaccharide”. X-ray diffraction, 5 ligands (RAM, NAG, MN). MolNFT v1 #51578 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2VBM
- Type
- protein
- Length
- 509 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tailspike-protein
- UniProt
- Q9XJP3
- Ligands
- RAM, NAG, MN, MG, PO4
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tailspike-protein | protein | 509 | 7% helix, 44% strand | Q9XJP3 |
Ligands and binding sites
- RAM · alpha-L-rhamnopyranose · sugar · 3 copies · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
- MN · Manganese (II) ion · metal · 2 copies · chains A
- MG · Magnesium ion · metal · chains A
- PO4 · Phosphate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 2VBM · Tailspike protein of bacteriophage Sf6 complexed with tetrasaccharide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9XJP3
- Elsewhere: RCSB PDB 2VBM · PDBe 2VBM · UniProt Q9XJP3
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