MolNFT v1 · #51541 · protein

Crystal structure of NCAM2 IG1 (I4122 cell unit)

2VAJ · Neural cell adhesion molecule 2: “Crystal structure of NCAM2 IG1 (I4122 cell unit)”. X-ray diffraction, 2 pockets (best druggability 0.41). MolNFT v1 #51541 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2VAJ
Type: protein
Length: 93 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Neural cell adhesion molecule 2
UniProt: O15394
Pockets: 2 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 52% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Neural cell adhesion molecule 2	protein	93	3% helix, 52% strand	O15394

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	118	0.41	0.75	16	empty
2	52	0.29	0.75	15	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

2VAJ · Crystal structure of NCAM2 Ig1 (I4122 cell unit) · the same entry in another collection · chain A against A, TM-score 1.00
O15394 · AlphaFold monomer V2.0 prediction for neural cell adhesion molecule 2 (O15394) · a predicted model of the same protein · chain A against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O15394
Elsewhere: RCSB PDB 2VAJ · PDBe 2VAJ · UniProt O15394

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