MolNFT v1 · #51492 · protein

Crystal structure of P. abyssi RPS24

2V94 · 30S ribosomal protein S24E: “Crystal structure of P. abyssi RPS24”. X-ray diffraction, 1 pocket (best druggability 0.54). MolNFT v1 #51492 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2V94
Type: protein
Length: 190 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 30S ribosomal protein S24E
UniProt: Q9UY20
Pockets: 1 · best druggability 0.54

Structure

x-ray diffraction · 2 distinct chains · 29% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	30S ribosomal protein S24E	protein	96	29% helix, 36% strand	Q9UY20
B	30S ribosomal protein S24E	protein	94	30% helix, 38% strand	Q9UY20

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	90	0.54	0.84	21	empty

Interfaces

1 interface between chains.

A–B · 574 Å² buried · 6 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 7 modified (engineered).

Compared structures

2V94 · Crystal structure of P. abyssi RPS24 · the same entry in another collection · chain A against A, TM-score 1.00
Q9UY20 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S24E (Q9UY20) · a predicted model of the same protein · chain B against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9UY20
Elsewhere: RCSB PDB 2V94 · PDBe 2V94 · UniProt Q9UY20

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