MolNFT v1 · #51457 · protein

Crystal structure of the TP0655 (tppotd) lipoprotein of treponema pallidum

2V84 · SPERMIDINE/PUTRESCINE ABC transporter, periplasmic binding…: “Crystal structure of the TP0655 (tppotd) lipoprotein of treponema pallidum”. X-ray diffraction, 1 ligand (CL), 1 pocket (best druggability 0.69). MolNFT v1 #51457 on…

PDB: 2V84
Type: protein
Length: 319 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SPERMIDINE/PUTRESCINE ABC transporter, periplasmic binding protein
UniProt: O83661
Ligands: CL
Pockets: 1 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	SPERMIDINE/PUTRESCINE ABC transporter, periplasmic binding protein	protein	319	45% helix, 18% strand	O83661

Ligands and binding sites

CL · Chloride ion · ion · 5 copies · chains A
MES · 2-(N-morpholino)-ethanesulfonic acid · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	560	0.69	0.78	54	MES, CL

Compared structures

2V84 · Crystal Structure of the Tp0655 (TpPotD) Lipoprotein of Treponema pallidum · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O83661
Elsewhere: RCSB PDB 2V84 · PDBe 2V84 · UniProt O83661

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