MolNFT v1 · #51378 · protein

Crystal structure of NCAM2 IG2-3

2V5T · Neural cell adhesion molecule 2: “Crystal structure of NCAM2 IG2-3”. X-ray diffraction, 2 ligands (NAG, SO4). MolNFT v1 #51378 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2V5T
Type: protein
Length: 184 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Neural cell adhesion molecule 2
UniProt: O15394
Ligands: NAG, SO4

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 57% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Neural cell adhesion molecule 2	protein	184	3% helix, 57% strand	O15394

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
SO4 · Sulfate ion · ion · 2 copies · chains A
GOL · Glycerol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

2V5T · Crystal structure of NCAM2 Ig2-3 · the same entry in another collection · chain A against A, TM-score 1.00
O15394 · AlphaFold monomer V2.0 prediction for neural cell adhesion molecule 2 (O15394) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O15394
Elsewhere: RCSB PDB 2V5T · PDBe 2V5T · UniProt O15394

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