MolNFT v1 · #51367 · protein
Structure of the receptor-binding protein of bacteriophage DET7: a podoviral tailspike in a myovirus
2V5I · Salmonella typhimurium DB7155 bacteriophage DET7 tailspike: “Structure of the receptor-binding protein of bacteriophage DET7: a podoviral tailspike in a myovirus”. X-ray diffraction, 1 ligand (NA), 3 pockets (best druggability…
- PDB
- 2V5I
- Type
- protein
- Length
- 553 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Salmonella typhimurium DB7155 bacteriophage DET7 tailspike
- Ligands
- NA
- Pockets
- 3 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Salmonella typhimurium DB7155 bacteriophage DET7 tailspike | protein | 553 | 8% helix, 42% strand | — |
Ligands and binding sites
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 231 | 0.49 | 0.75 | 30 | empty |
| 2 | 145 | 0.40 | 0.74 | 34 | empty |
| 3 | 104 | 0.33 | 0.73 | 19 | empty |
Compared structures
- 2V5I · Structure of the receptor-binding protein of bacteriophage Det7: a podoviral tailspike in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2V5I · PDBe 2V5I
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