MolNFT v1 · #51239 · protein
Crystal structure of radiation-induced metmyoglobin - aqua ferrous myoglobin at pH 8.7
2V1J: “Crystal structure of radiation-induced metmyoglobin - aqua ferrous myoglobin at pH 8.7”. X-ray diffraction, 2 ligands (HEM, SO4), 1 pocket (best druggability 0.70). MolNFT v1 #51239 on GenesisL1: 3D structure, binding sites and…
- PDB
- 2V1J
- Type
- protein
- Length
- 153 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Myoglobin
- UniProt
- P68082
- Ligands
- HEM, SO4
- Pockets
- 1 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 78% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Myoglobin | protein | 153 | 78% helix, 0% strand | P68082 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
- GOL · Glycerol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 174 | 0.70 | 0.88 | 26 | HEM |
Compared structures
- 2V1J · Crystal structure of radiation-induced metmyoglobin - aqua ferrous myoglobin at pH 8.7 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P68082
- Elsewhere: RCSB PDB 2V1J · PDBe 2V1J · UniProt P68082
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