MolNFT v1 · #5115 · protein

Human CD69 - trigonal form

1E87 · Early activation antigen CD69: “Human CD69 - trigonal form”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #5115 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1E87
Type: protein
Length: 117 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Early activation antigen CD69
UniProt: Q07108
Ligands: ZN

Structure

x-ray diffraction · 1 distinct chain · 18% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Early activation antigen CD69	protein	117	18% helix, 33% strand	Q07108

Ligands and binding sites

ZN · Zinc ion · metal · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

1E87 · Human CD69 - trigonal form · the same entry in another collection · chain A against A, TM-score 1.00
Q07108 · AlphaFold monomer V2.0 prediction for early activation antigen CD69 (Q07108) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q07108
Elsewhere: RCSB PDB 1E87 · PDBe 1E87 · UniProt Q07108

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